Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 GPX1P2-201ENST00000429271 606 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 RHOQP3-201ENST00000437982 621 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 KRT18P2-201ENST00000447938 1258 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 KRT18P3-201ENST00000451602 1288 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 PRYP6-201ENST00000514804 343 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 RNA5SP416-201ENST00000516838 111 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC034105.1-201ENST00000563488 319 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC145285.3-201ENST00000564603 959 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC002347.1-201ENST00000569543 541 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 MIR4321-201ENST00000592276 80 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC023141.13-201ENST00000604991 943 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.82□□□□□ -0.2
NKX3-1Q99801 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.82□□□□□ -0.2
NKX3-1Q99801 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NKX3-1Q99801 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 AC026748.1-201ENST00000624349 3251 ntBASIC13.81□□□□□ -0.2
NKX3-1Q99801 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 CICP23-201ENST00000605013 2741 ntBASIC13.81□□□□□ -0.2
NKX3-1Q99801 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NKX3-1Q99801 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
NKX3-1Q99801 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.8□□□□□ -0.2
NKX3-1Q99801 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NKX3-1Q99801 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms