Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC099336.1-201ENST00000417053 1171 ntBASIC15.27■□□□□ 0.04
LMX1AQ8TE12 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC022494.1-201ENST00000466044 728 ntBASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC106760.1-201ENST00000508690 800 ntBASIC15.27■□□□□ 0.04
LMX1AQ8TE12 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.27■□□□□ 0.03
LMX1AQ8TE12 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 FAM86MP-201ENST00000340703 885 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 AC016694.1-201ENST00000434179 700 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CSF2RBP1-201ENST00000447905 391 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 AC015910.1-201ENST00000579400 975 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 RN7SL219P-201ENST00000582872 296 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PCDH8P1-201ENST00000428983 2773 ntBASIC15.26■□□□□ 0.03
LMX1AQ8TE12 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LMX1AQ8TE12 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 LTB4R2-202ENST00000528054 3092 ntBASIC15.25■□□□□ 0.03
LMX1AQ8TE12 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms