Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC25.7■■□□□ 1.7
CUX1P39880 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
CUX1P39880 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CUX1P39880 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
CUX1P39880 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC25.7■■□□□ 1.7
CUX1P39880 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CUX1P39880 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC25.69■■□□□ 1.7
CUX1P39880 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC25.69■■□□□ 1.7
CUX1P39880 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC25.69■■□□□ 1.7
CUX1P39880 AC090164.2-201ENST00000611487 516 ntBASIC25.69■■□□□ 1.7
CUX1P39880 AL353770.1-201ENST00000614915 403 ntBASIC25.69■■□□□ 1.7
CUX1P39880 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CUX1P39880 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC25.69■■□□□ 1.7
CUX1P39880 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CUX1P39880 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CUX1P39880 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CUX1P39880 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CUX1P39880 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 AC092364.2-201ENST00000596710 2692 ntBASIC25.69■■□□□ 1.7
CUX1P39880 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC25.69■■□□□ 1.7
CUX1P39880 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CUX1P39880 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC25.68■■□□□ 1.7
CUX1P39880 RN7SL181P-201ENST00000462921 277 ntBASIC25.68■■□□□ 1.7
CUX1P39880 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC25.68■■□□□ 1.7
CUX1P39880 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC25.68■■□□□ 1.7
CUX1P39880 MIR4754-201ENST00000582477 89 ntBASIC25.68■■□□□ 1.7
CUX1P39880 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC25.68■■□□□ 1.7
CUX1P39880 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC25.68■■□□□ 1.7
CUX1P39880 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC25.68■■□□□ 1.7
CUX1P39880 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
CUX1P39880 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC25.68■■□□□ 1.7
CUX1P39880 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC25.68■■□□□ 1.7
CUX1P39880 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC25.68■■□□□ 1.7
CUX1P39880 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC25.68■■□□□ 1.7
CUX1P39880 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX1P39880 AC020922.3-201ENST00000595064 547 ntBASIC25.68■■□□□ 1.7
CUX1P39880 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC25.68■■□□□ 1.7
CUX1P39880 AC004923.1-202ENST00000642106 209 ntBASIC25.68■■□□□ 1.7
CUX1P39880 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
CUX1P39880 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
CUX1P39880 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 AC127383.1-201ENST00000444697 1800 ntBASIC25.67■■□□□ 1.7
CUX1P39880 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 ILF3-AS1-201ENST00000591501 1983 ntBASIC25.67■■□□□ 1.7
CUX1P39880 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 VDAC1P1-201ENST00000439229 848 ntBASIC25.67■■□□□ 1.7
CUX1P39880 AC104784.1-201ENST00000473096 294 ntBASIC25.67■■□□□ 1.7
CUX1P39880 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC25.67■■□□□ 1.7
CUX1P39880 AC138696.2-201ENST00000607376 223 ntBASIC25.67■■□□□ 1.7
CUX1P39880 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC25.67■■□□□ 1.7
CUX1P39880 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC25.67■■□□□ 1.7
CUX1P39880 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
CUX1P39880 AC112504.1-201ENST00000623415 1841 ntBASIC25.67■■□□□ 1.7
CUX1P39880 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX1P39880 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX1P39880 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CUX1P39880 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CUX1P39880 AC026434.2-201ENST00000506094 1078 ntBASIC25.66■■□□□ 1.7
CUX1P39880 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX1P39880 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 MIR7845-201ENST00000618396 99 ntBASIC25.66■■□□□ 1.7
CUX1P39880 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX1P39880 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CUX1P39880 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX1P39880 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms