Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CIITAP33076 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CIITAP33076 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CIITAP33076 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.63■□□□□ 0.41
CIITAP33076 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 RPL5P21-201ENST00000404620 815 ntBASIC17.62■□□□□ 0.41
CIITAP33076 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 GAPDHP21-201ENST00000450301 1010 ntBASIC17.62■□□□□ 0.41
CIITAP33076 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.62■□□□□ 0.41
CIITAP33076 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 AC120045.2-201ENST00000567334 178 ntBASIC17.62■□□□□ 0.41
CIITAP33076 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.62■□□□□ 0.41
CIITAP33076 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.62■□□□□ 0.41
CIITAP33076 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
CIITAP33076 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 AL645728.2-202ENST00000641679 227 ntBASIC17.62■□□□□ 0.41
CIITAP33076 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
CIITAP33076 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.62■□□□□ 0.41
CIITAP33076 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CIITAP33076 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.62■□□□□ 0.41
CIITAP33076 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.61■□□□□ 0.41
CIITAP33076 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.61■□□□□ 0.41
CIITAP33076 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CIITAP33076 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CIITAP33076 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 AC133539.2-201ENST00000604757 467 ntBASIC17.61■□□□□ 0.41
CIITAP33076 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 AL033527.5-201ENST00000641382 801 ntBASIC17.61■□□□□ 0.41
CIITAP33076 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
CIITAP33076 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.61■□□□□ 0.41
CIITAP33076 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CIITAP33076 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CIITAP33076 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
CIITAP33076 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.6■□□□□ 0.41
CIITAP33076 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CIITAP33076 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.6■□□□□ 0.41
CIITAP33076 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CIITAP33076 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.6■□□□□ 0.41
CIITAP33076 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms