Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EIF3FP3-201ENST00000434851 1086 ntBASIC20.57■□□□□ 0.88
HOXC9P31274 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.57■□□□□ 0.88
HOXC9P31274 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.57■□□□□ 0.88
HOXC9P31274 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.57■□□□□ 0.88
HOXC9P31274 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.57■□□□□ 0.88
HOXC9P31274 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC20.57■□□□□ 0.88
HOXC9P31274 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.56■□□□□ 0.88
HOXC9P31274 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20.56■□□□□ 0.88
HOXC9P31274 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
HOXC9P31274 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.56■□□□□ 0.88
HOXC9P31274 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 AC127383.1-201ENST00000444697 1800 ntBASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC9P31274 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 AL645937.2-201ENST00000396808 931 ntBASIC20.56■□□□□ 0.88
HOXC9P31274 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.56■□□□□ 0.88
HOXC9P31274 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 AC004066.1-201ENST00000502488 802 ntBASIC20.56■□□□□ 0.88
HOXC9P31274 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC20.56■□□□□ 0.88
HOXC9P31274 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 AC104982.3-201ENST00000581995 514 ntBASIC20.56■□□□□ 0.88
HOXC9P31274 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.56■□□□□ 0.88
HOXC9P31274 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC9P31274 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.56■□□□□ 0.88
HOXC9P31274 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
HOXC9P31274 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HOXC9P31274 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 LRRC59-203ENST00000576448 1531 ntBASIC20.55■□□□□ 0.88
HOXC9P31274 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
HOXC9P31274 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.55■□□□□ 0.88
HOXC9P31274 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HOXC9P31274 CALR4P-201ENST00000431943 946 ntBASIC20.55■□□□□ 0.88
HOXC9P31274 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC9P31274 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.55■□□□□ 0.88
HOXC9P31274 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC20.55■□□□□ 0.88
HOXC9P31274 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
HOXC9P31274 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC9P31274 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC9P31274 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC9P31274 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
HOXC9P31274 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 AL023775.1-201ENST00000454907 1746 ntBASIC20.54■□□□□ 0.88
HOXC9P31274 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms