Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 AC018735.1-201ENST00000437208 1502 ntBASIC18.05■□□□□ 0.48
COL2A1P02458 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL2A1P02458 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.04■□□□□ 0.48
COL2A1P02458 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.04■□□□□ 0.48
COL2A1P02458 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.04■□□□□ 0.48
COL2A1P02458 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.04■□□□□ 0.48
COL2A1P02458 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.04■□□□□ 0.48
COL2A1P02458 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.04■□□□□ 0.48
COL2A1P02458 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 COX5BP1-201ENST00000507622 393 ntBASIC18.04■□□□□ 0.48
COL2A1P02458 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.04■□□□□ 0.48
COL2A1P02458 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.04■□□□□ 0.48
COL2A1P02458 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.04■□□□□ 0.48
COL2A1P02458 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL2A1P02458 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
COL2A1P02458 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC18.03■□□□□ 0.48
COL2A1P02458 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
COL2A1P02458 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL2A1P02458 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 AL136309.1-201ENST00000403917 691 ntBASIC18.03■□□□□ 0.48
COL2A1P02458 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.03■□□□□ 0.48
COL2A1P02458 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 AL391280.1-201ENST00000506969 1062 ntBASIC18.03■□□□□ 0.48
COL2A1P02458 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL2A1P02458 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.03■□□□□ 0.48
COL2A1P02458 AP001258.2-201ENST00000529891 490 ntBASIC18.03■□□□□ 0.48
COL2A1P02458 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.03■□□□□ 0.48
COL2A1P02458 AC138466.3-201ENST00000619983 221 ntBASIC18.03■□□□□ 0.48
COL2A1P02458 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.03■□□□□ 0.48
COL2A1P02458 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.03■□□□□ 0.48
COL2A1P02458 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL2A1P02458 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL2A1P02458 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL2A1P02458 AC055811.4-201ENST00000624039 1754 ntBASIC18.03■□□□□ 0.48
COL2A1P02458 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
COL2A1P02458 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.02■□□□□ 0.48
COL2A1P02458 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.02■□□□□ 0.48
COL2A1P02458 SCARNA20.5-201ENST00000516991 142 ntBASIC18.02■□□□□ 0.48
COL2A1P02458 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC18.02■□□□□ 0.48
COL2A1P02458 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL2A1P02458 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.02■□□□□ 0.48
COL2A1P02458 OR10B1P-201ENST00000601666 907 ntBASIC18.02■□□□□ 0.48
COL2A1P02458 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
COL2A1P02458 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.02■□□□□ 0.48
COL2A1P02458 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 AC009090.5-201ENST00000624886 2285 ntBASIC18.02■□□□□ 0.48
COL2A1P02458 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL2A1P02458 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms