Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 AC097376.2-205ENST00000610159 5334 ntBASIC15.32■□□□□ 0.04
LDLRP01130 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 AC002056.1-201ENST00000395613 760 ntBASIC15.32■□□□□ 0.04
LDLRP01130 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.32■□□□□ 0.04
LDLRP01130 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.32■□□□□ 0.04
LDLRP01130 FAM185BP-201ENST00000443595 716 ntBASIC15.32■□□□□ 0.04
LDLRP01130 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 AC069335.1-201ENST00000489972 472 ntBASIC15.32■□□□□ 0.04
LDLRP01130 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.32■□□□□ 0.04
LDLRP01130 CYP2A7P1-201ENST00000595391 815 ntBASIC15.32■□□□□ 0.04
LDLRP01130 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.32■□□□□ 0.04
LDLRP01130 AC008761.3-201ENST00000624803 892 ntBASIC15.32■□□□□ 0.04
LDLRP01130 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 TUBB3P1-201ENST00000405796 1332 ntBASIC15.32■□□□□ 0.04
LDLRP01130 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
LDLRP01130 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDLRP01130 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDLRP01130 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 AC087481.3-201ENST00000602886 1894 ntBASIC15.31■□□□□ 0.04
LDLRP01130 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.31■□□□□ 0.04
LDLRP01130 AL355306.1-201ENST00000415580 579 ntBASIC15.31■□□□□ 0.04
LDLRP01130 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.31■□□□□ 0.04
LDLRP01130 HLA-V-201ENST00000429037 534 ntBASIC15.31■□□□□ 0.04
LDLRP01130 KLF2P3-201ENST00000451977 1087 ntBASIC15.31■□□□□ 0.04
LDLRP01130 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 MEIS3P1-201ENST00000495167 958 ntBASIC15.31■□□□□ 0.04
LDLRP01130 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.31■□□□□ 0.04
LDLRP01130 FAM86C2P-203ENST00000528684 1004 ntBASIC15.31■□□□□ 0.04
LDLRP01130 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.31■□□□□ 0.04
LDLRP01130 LINC02560-201ENST00000596379 459 ntBASIC15.31■□□□□ 0.04
LDLRP01130 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
LDLRP01130 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LDLRP01130 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDLRP01130 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms