Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
NPHP1O15259 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.76
NPHP1O15259 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 AC011270.2-201ENST00000624293 2550 ntBASIC19.83■□□□□ 0.76
NPHP1O15259 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.83■□□□□ 0.76
NPHP1O15259 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP1O15259 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NPHP1O15259 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP1O15259 AC012441.1-201ENST00000446669 685 ntBASIC19.82■□□□□ 0.76
NPHP1O15259 AP000812.2-201ENST00000538934 718 ntBASIC19.82■□□□□ 0.76
NPHP1O15259 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP1O15259 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.82■□□□□ 0.76
NPHP1O15259 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.82■□□□□ 0.76
NPHP1O15259 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP1O15259 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
NPHP1O15259 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.82■□□□□ 0.76
NPHP1O15259 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.82■□□□□ 0.76
NPHP1O15259 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP1O15259 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 MSTO2P-201ENST00000314835 1709 ntBASIC19.82■□□□□ 0.76
NPHP1O15259 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NPHP1O15259 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NPHP1O15259 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
NPHP1O15259 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
NPHP1O15259 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 AC078925.2-201ENST00000624013 1973 ntBASIC19.81■□□□□ 0.76
NPHP1O15259 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
NPHP1O15259 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 AC106760.1-201ENST00000508690 800 ntBASIC19.81■□□□□ 0.76
NPHP1O15259 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
NPHP1O15259 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP1O15259 CLUHP6-201ENST00000580789 941 ntBASIC19.81■□□□□ 0.76
NPHP1O15259 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 REXO1L8P-201ENST00000604378 1897 ntBASIC19.81■□□□□ 0.76
NPHP1O15259 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP1O15259 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.81■□□□□ 0.76
NPHP1O15259 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 AC134407.2-201ENST00000625089 1978 ntBASIC19.81■□□□□ 0.76
NPHP1O15259 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NPHP1O15259 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NPHP1O15259 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.81■□□□□ 0.76
NPHP1O15259 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NPHP1O15259 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.8■□□□□ 0.76
NPHP1O15259 PHKG1P2-201ENST00000457537 863 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 AC093433.1-201ENST00000458048 571 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.8■□□□□ 0.76
NPHP1O15259 RN7SL560P-201ENST00000577943 264 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.8■□□□□ 0.76
NPHP1O15259 AL450472.2-201ENST00000603663 1156 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 AC091271.1-201ENST00000611877 1162 ntBASIC19.8■□□□□ 0.76
NPHP1O15259 AC244669.2-201ENST00000612320 853 ntBASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms