Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 AC008764.7-201ENST00000593779 1081 ntBASIC25.54■■□□□ 1.68
LRCH3Q96II8 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.54■■□□□ 1.68
LRCH3Q96II8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.54■■□□□ 1.68
LRCH3Q96II8 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
LRCH3Q96II8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
LRCH3Q96II8 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 AL031602.1-201ENST00000633169 911 ntBASIC25.53■■□□□ 1.68
LRCH3Q96II8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.53■■□□□ 1.68
LRCH3Q96II8 SYT6-210ENST00000641643 1587 ntBASIC25.52■■□□□ 1.68
LRCH3Q96II8 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.52■■□□□ 1.68
LRCH3Q96II8 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.52■■□□□ 1.68
LRCH3Q96II8 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.52■■□□□ 1.68
LRCH3Q96II8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
LRCH3Q96II8 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
LRCH3Q96II8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
LRCH3Q96II8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
LRCH3Q96II8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
LRCH3Q96II8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.51■■□□□ 1.67
LRCH3Q96II8 MIR6722-201ENST00000617286 78 ntBASIC25.51■■□□□ 1.67
LRCH3Q96II8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
LRCH3Q96II8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
LRCH3Q96II8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.5■■□□□ 1.67
LRCH3Q96II8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
LRCH3Q96II8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
LRCH3Q96II8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
LRCH3Q96II8 AC099791.1-201ENST00000416440 715 ntBASIC25.49■■□□□ 1.67
LRCH3Q96II8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC25.49■■□□□ 1.67
LRCH3Q96II8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.49■■□□□ 1.67
LRCH3Q96II8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.49■■□□□ 1.67
LRCH3Q96II8 SNX5-217ENST00000606557 1087 ntBASIC25.49■■□□□ 1.67
LRCH3Q96II8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.49■■□□□ 1.67
LRCH3Q96II8 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
LRCH3Q96II8 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRCH3Q96II8 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LRCH3Q96II8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRCH3Q96II8 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRCH3Q96II8 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.48■■□□□ 1.67
LRCH3Q96II8 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
LRCH3Q96II8 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRCH3Q96II8 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRCH3Q96II8 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRCH3Q96II8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRCH3Q96II8 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
LRCH3Q96II8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.47■■□□□ 1.67
LRCH3Q96II8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.47■■□□□ 1.67
LRCH3Q96II8 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
LRCH3Q96II8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRCH3Q96II8 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
LRCH3Q96II8 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
LRCH3Q96II8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRCH3Q96II8 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.46■■□□□ 1.67
LRCH3Q96II8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L2-201ENST00000561772 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L6-201ENST00000626483 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L1-201ENST00000627662 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L8-201ENST00000629013 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L3-201ENST00000630187 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L7-201ENST00000630678 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 DUX4L5-201ENST00000630834 1275 ntBASIC25.46■■□□□ 1.67
LRCH3Q96II8 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRCH3Q96II8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRCH3Q96II8 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.46■■□□□ 1.67
LRCH3Q96II8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.45■■□□□ 1.66
LRCH3Q96II8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LRCH3Q96II8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.45■■□□□ 1.66
LRCH3Q96II8 AC066615.1-201ENST00000640911 628 ntBASIC25.45■■□□□ 1.66
LRCH3Q96II8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.45■■□□□ 1.66
LRCH3Q96II8 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
LRCH3Q96II8 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRCH3Q96II8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRCH3Q96II8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRCH3Q96II8 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.44■■□□□ 1.66
LRCH3Q96II8 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRCH3Q96II8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRCH3Q96II8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
LRCH3Q96II8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.43■■□□□ 1.66
LRCH3Q96II8 SERBP1P1-201ENST00000396021 1160 ntBASIC25.43■■□□□ 1.66
LRCH3Q96II8 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.43■■□□□ 1.66
LRCH3Q96II8 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
LRCH3Q96II8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
LRCH3Q96II8 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.42■■□□□ 1.66
LRCH3Q96II8 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.42■■□□□ 1.66
LRCH3Q96II8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.42■■□□□ 1.66
LRCH3Q96II8 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRCH3Q96II8 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
LRCH3Q96II8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
LRCH3Q96II8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
LRCH3Q96II8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.41■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms