Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HSPG2P98160 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.81□□□□□ -0.04
HSPG2P98160 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.8□□□□□ -0.04
HSPG2P98160 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC14.8□□□□□ -0.04
HSPG2P98160 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC14.8□□□□□ -0.04
HSPG2P98160 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC14.8□□□□□ -0.04
HSPG2P98160 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC14.8□□□□□ -0.04
HSPG2P98160 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HSPG2P98160 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HSPG2P98160 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC14.8□□□□□ -0.04
HSPG2P98160 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC14.79□□□□□ -0.04
HSPG2P98160 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HSPG2P98160 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HSPG2P98160 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HSPG2P98160 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HSPG2P98160 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HSPG2P98160 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC14.78□□□□□ -0.04
HSPG2P98160 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HSPG2P98160 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC14.78□□□□□ -0.04
HSPG2P98160 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HSPG2P98160 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC14.78□□□□□ -0.04
HSPG2P98160 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HSPG2P98160 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HSPG2P98160 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC14.78□□□□□ -0.04
HSPG2P98160 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HSPG2P98160 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC14.78□□□□□ -0.04
HSPG2P98160 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC14.78□□□□□ -0.04
HSPG2P98160 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HSPG2P98160 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
HSPG2P98160 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
HSPG2P98160 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
HSPG2P98160 ME3-201ENST00000323418 1068 ntTSL 5 BASIC14.77□□□□□ -0.04
HSPG2P98160 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC14.77□□□□□ -0.04
HSPG2P98160 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HSPG2P98160 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HSPG2P98160 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HSPG2P98160 DUX4L19-201ENST00000557448 1267 ntBASIC14.76□□□□□ -0.05
HSPG2P98160 AC066615.1-201ENST00000640911 628 ntBASIC14.76□□□□□ -0.05
HSPG2P98160 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC14.76□□□□□ -0.05
HSPG2P98160 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HSPG2P98160 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HSPG2P98160 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC14.75□□□□□ -0.05
HSPG2P98160 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 PTCHD3P2-201ENST00000424937 1205 ntBASIC14.75□□□□□ -0.05
HSPG2P98160 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC14.75□□□□□ -0.05
HSPG2P98160 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
HSPG2P98160 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
HSPG2P98160 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC14.75□□□□□ -0.05
HSPG2P98160 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HSPG2P98160 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
HSPG2P98160 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HSPG2P98160 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
HSPG2P98160 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HSPG2P98160 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HSPG2P98160 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HSPG2P98160 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HSPG2P98160 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HSPG2P98160 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HSPG2P98160 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC14.74□□□□□ -0.05
HSPG2P98160 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HSPG2P98160 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.74□□□□□ -0.05
HSPG2P98160 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.73□□□□□ -0.05
HSPG2P98160 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HSPG2P98160 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HSPG2P98160 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HSPG2P98160 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HSPG2P98160 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC14.73□□□□□ -0.05
HSPG2P98160 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HSPG2P98160 AC123595.1-201ENST00000440769 1046 ntBASIC14.73□□□□□ -0.05
HSPG2P98160 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HSPG2P98160 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HSPG2P98160 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HSPG2P98160 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
HSPG2P98160 CDCA4P2-201ENST00000441182 718 ntBASIC14.72□□□□□ -0.05
HSPG2P98160 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC14.72□□□□□ -0.05
HSPG2P98160 AL138724.1-201ENST00000606771 1088 ntBASIC14.72□□□□□ -0.05
HSPG2P98160 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HSPG2P98160 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HSPG2P98160 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HSPG2P98160 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HSPG2P98160 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HSPG2P98160 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC14.72□□□□□ -0.05
HSPG2P98160 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms