Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
SCN1AP35498 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SCN1AP35498 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SCN1AP35498 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
SCN1AP35498 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.08■■□□□ 1.61
SCN1AP35498 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.08■■□□□ 1.61
SCN1AP35498 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.08■■□□□ 1.61
SCN1AP35498 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SCN1AP35498 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
SCN1AP35498 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SCN1AP35498 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SCN1AP35498 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.08■■□□□ 1.61
SCN1AP35498 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SCN1AP35498 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.08■■□□□ 1.61
SCN1AP35498 UNC93B8-201ENST00000511903 705 ntBASIC25.08■■□□□ 1.61
SCN1AP35498 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.6
SCN1AP35498 AC020928.2-201ENST00000588717 2197 ntBASIC25.08■■□□□ 1.6
SCN1AP35498 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.07■■□□□ 1.6
SCN1AP35498 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SCN1AP35498 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.07■■□□□ 1.6
SCN1AP35498 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.07■■□□□ 1.6
SCN1AP35498 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.07■■□□□ 1.6
SCN1AP35498 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SCN1AP35498 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.07■■□□□ 1.6
SCN1AP35498 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SCN1AP35498 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SCN1AP35498 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.07■■□□□ 1.6
SCN1AP35498 AC022211.4-201ENST00000625094 2161 ntBASIC25.06■■□□□ 1.6
SCN1AP35498 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.06■■□□□ 1.6
SCN1AP35498 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
SCN1AP35498 MIR6089-201ENST00000616698 64 ntBASIC25.06■■□□□ 1.6
SCN1AP35498 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.06■■□□□ 1.6
SCN1AP35498 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SCN1AP35498 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SCN1AP35498 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.06■■□□□ 1.6
SCN1AP35498 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SCN1AP35498 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.05■■□□□ 1.6
SCN1AP35498 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SCN1AP35498 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SCN1AP35498 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SCN1AP35498 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
SCN1AP35498 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SCN1AP35498 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SCN1AP35498 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.04■■□□□ 1.6
SCN1AP35498 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SCN1AP35498 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SCN1AP35498 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.03■■□□□ 1.6
SCN1AP35498 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SCN1AP35498 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SCN1AP35498 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SCN1AP35498 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.03■■□□□ 1.6
SCN1AP35498 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SCN1AP35498 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.02■■□□□ 1.6
SCN1AP35498 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SCN1AP35498 AC092028.1-203ENST00000608262 953 ntBASIC25.02■■□□□ 1.6
SCN1AP35498 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.02■■□□□ 1.6
SCN1AP35498 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.02■■□□□ 1.6
SCN1AP35498 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.02■■□□□ 1.6
SCN1AP35498 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.02■■□□□ 1.6
SCN1AP35498 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.02■■□□□ 1.6
SCN1AP35498 SNX5-217ENST00000606557 1087 ntBASIC25.02■■□□□ 1.6
SCN1AP35498 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
SCN1AP35498 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.01■■□□□ 1.59
SCN1AP35498 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.01■■□□□ 1.59
SCN1AP35498 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC25.01■■□□□ 1.59
SCN1AP35498 KRT16P3-201ENST00000439127 1283 ntBASIC25.01■■□□□ 1.59
SCN1AP35498 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SCN1AP35498 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SCN1AP35498 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
SCN1AP35498 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SCN1AP35498 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25■■□□□ 1.59
SCN1AP35498 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25■■□□□ 1.59
SCN1AP35498 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25■■□□□ 1.59
SCN1AP35498 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25■■□□□ 1.59
SCN1AP35498 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
SCN1AP35498 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SCN1AP35498 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25■■□□□ 1.59
SCN1AP35498 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25■■□□□ 1.59
SCN1AP35498 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.99■■□□□ 1.59
SCN1AP35498 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
SCN1AP35498 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SCN1AP35498 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SCN1AP35498 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.99■■□□□ 1.59
SCN1AP35498 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC24.98■■□□□ 1.59
SCN1AP35498 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
SCN1AP35498 AC131212.1-201ENST00000613771 668 ntBASIC24.98■■□□□ 1.59
SCN1AP35498 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SCN1AP35498 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SCN1AP35498 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.97■■□□□ 1.59
SCN1AP35498 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
SCN1AP35498 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.96■■□□□ 1.59
SCN1AP35498 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms