Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL133215.2-201ENST00000609242 977 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 CETN4P-206ENST00000642099 2168 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 MIR1233-2-201ENST00000408138 82 ntBASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 MIR1233-1-201ENST00000408722 82 ntBASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AZGP1P1-201ENST00000411909 902 ntBASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AC069262.1-201ENST00000539058 672 ntBASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AC006538.3-201ENST00000612495 578 ntBASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS9D1Q9Y2B5 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AC090616.6-203ENST00000579186 1945 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 CNN2P2-201ENST00000443536 909 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 CNN2P3-201ENST00000450201 906 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 HLA-J-203ENST00000494367 1087 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AL079307.3-201ENST00000556114 283 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 HMGB1P8-201ENST00000558211 949 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AC016180.1-201ENST00000567945 403 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AC097359.3-201ENST00000603982 1210 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AL353729.2-201ENST00000605859 1249 ntBASIC15.73■□□□□ 0.11
VPS9D1Q9Y2B5 AL136317.3-201ENST00000618497 906 ntBASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms