Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC29.62■■■□□ 2.33
SHROOM4Q9ULL8 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 KRTAP10-13P-201ENST00000412914 571 ntBASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 AC078819.1-201ENST00000547454 765 ntBASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 AC012085.1-201ENST00000548270 765 ntBASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
SHROOM4Q9ULL8 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 LBH-202ENST00000401506 485 ntTSL 3 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 DEF8-202ENST00000418391 852 ntTSL 2 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 POM121L10P-201ENST00000436994 1285 ntBASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 AC097724.1-201ENST00000609581 426 ntBASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 AHCYP2-201ENST00000430630 1300 ntBASIC29.6■■■□□ 2.33
SHROOM4Q9ULL8 AC015818.8-201ENST00000587907 1519 ntBASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 MIR648-201ENST00000385046 94 ntBASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 AC026410.3-201ENST00000514280 936 ntBASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC29.59■■■□□ 2.33
SHROOM4Q9ULL8 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 FAM197Y7-201ENST00000432892 766 ntBASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 MIR4313-201ENST00000580760 101 ntBASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC29.58■■■□□ 2.33
SHROOM4Q9ULL8 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms