Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC069262.1-201ENST00000539058 672 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 AC025678.2-201ENST00000562061 970 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 AC091951.1-201ENST00000512854 2465 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 MIR4453-201ENST00000584019 89 ntBASIC16.29■□□□□ 0.2
PCDH9Q9HC56 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC026979.3-201ENST00000607315 403 ntBASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC007967.4-201ENST00000614700 386 ntBASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH9Q9HC56 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 FAM45BP-202ENST00000592932 1624 ntBASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 HNRNPUP1-201ENST00000554987 333 ntBASIC16.28■□□□□ 0.2
PCDH9Q9HC56 AC105021.1-202ENST00000570572 669 ntBASIC16.28■□□□□ 0.2
PCDH9Q9HC56 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms