Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CICP17-201ENST00000418553 2377 ntBASIC14.02□□□□□ -0.16
MMP28Q9H239 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
MMP28Q9H239 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
MMP28Q9H239 AC105250.1-201ENST00000509378 2057 ntBASIC14.02□□□□□ -0.16
MMP28Q9H239 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
MMP28Q9H239 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
MMP28Q9H239 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.02□□□□□ -0.16
MMP28Q9H239 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.02□□□□□ -0.16
MMP28Q9H239 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
MMP28Q9H239 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
MMP28Q9H239 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.02□□□□□ -0.17
MMP28Q9H239 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
MMP28Q9H239 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.02□□□□□ -0.17
MMP28Q9H239 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.02□□□□□ -0.17
MMP28Q9H239 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.02□□□□□ -0.17
MMP28Q9H239 FAM197Y8-203ENST00000450145 560 ntBASIC14.02□□□□□ -0.17
MMP28Q9H239 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.02□□□□□ -0.17
MMP28Q9H239 AP001005.1-201ENST00000571755 1248 ntBASIC14.02□□□□□ -0.17
MMP28Q9H239 AC025062.2-201ENST00000605477 670 ntBASIC14.02□□□□□ -0.17
MMP28Q9H239 AL353135.1-201ENST00000606729 504 ntBASIC14.02□□□□□ -0.17
MMP28Q9H239 BX640515.1-201ENST00000617215 977 ntBASIC14.02□□□□□ -0.17
MMP28Q9H239 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.02□□□□□ -0.17
MMP28Q9H239 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
MMP28Q9H239 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MMP28Q9H239 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 LAGE3P1-201ENST00000425356 484 ntBASIC14.01□□□□□ -0.17
MMP28Q9H239 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
MMP28Q9H239 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.01□□□□□ -0.17
MMP28Q9H239 AL139424.1-201ENST00000607572 797 ntBASIC14.01□□□□□ -0.17
MMP28Q9H239 AL773604.1-201ENST00000617417 272 ntBASIC14.01□□□□□ -0.17
MMP28Q9H239 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.01□□□□□ -0.17
MMP28Q9H239 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.01□□□□□ -0.17
MMP28Q9H239 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MMP28Q9H239 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MMP28Q9H239 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 MROH4P-201ENST00000431302 1578 ntBASIC14□□□□□ -0.17
MMP28Q9H239 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14□□□□□ -0.17
MMP28Q9H239 CICP8-201ENST00000455800 2813 ntBASIC14□□□□□ -0.17
MMP28Q9H239 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
MMP28Q9H239 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MMP28Q9H239 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms