Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL109837.1-201ENST00000603272 613 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC11.03□□□□□ -0.64
PRKDCP78527 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 LRRC59-203ENST00000576448 1531 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
PRKDCP78527 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC11.03□□□□□ -0.64
PRKDCP78527 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 EIF3FP3-201ENST00000434851 1086 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 ELP5-212ENST00000574255 671 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC11.03□□□□□ -0.64
PRKDCP78527 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC11.03□□□□□ -0.64
PRKDCP78527 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 AC106827.1-201ENST00000366454 431 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 AC026470.1-201ENST00000478038 846 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC11.03□□□□□ -0.64
PRKDCP78527 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC11.03□□□□□ -0.64
PRKDCP78527 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC11.03□□□□□ -0.64
PRKDCP78527 HMGB1P24-201ENST00000611897 328 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
PRKDCP78527 AC011471.3-201ENST00000623576 402 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 GNE-204ENST00000539208 2190 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC11.03□□□□□ -0.64
PRKDCP78527 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
PRKDCP78527 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC11.03□□□□□ -0.64
PRKDCP78527 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 IGHEP1-201ENST00000521393 651 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 MIR4313-201ENST00000580760 101 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC11.02□□□□□ -0.64
PRKDCP78527 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
PRKDCP78527 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
PRKDCP78527 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
PRKDCP78527 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
PRKDCP78527 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
PRKDCP78527 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC11.02□□□□□ -0.64
PRKDCP78527 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC11.02□□□□□ -0.64
PRKDCP78527 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
PRKDCP78527 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC11.02□□□□□ -0.65
PRKDCP78527 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
PRKDCP78527 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
PRKDCP78527 AC093826.1-201ENST00000508655 993 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 GDNF-207ENST00000515058 764 ntTSL 5 BASIC11.02□□□□□ -0.65
PRKDCP78527 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 AC073592.2-201ENST00000623062 780 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC11.02□□□□□ -0.65
PRKDCP78527 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 FAM90A7P-201ENST00000382628 1395 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 FAM90A23P-201ENST00000400136 1395 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 FAM90A2P-201ENST00000511144 1395 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 FAM90A25P-201ENST00000528404 1395 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.02□□□□□ -0.65
PRKDCP78527 PUDPP3-201ENST00000445368 636 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC11.02□□□□□ -0.65
PRKDCP78527 AC138466.3-201ENST00000619983 221 ntBASIC11.02□□□□□ -0.65
PRKDCP78527 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
PRKDCP78527 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 RN7SKP175-201ENST00000408472 289 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC004837.1-201ENST00000446267 564 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC142086.5-202ENST00000562500 217 ntBASIC11.01□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms