Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VSX2P58304 AC007541.1-201ENST00000570282 1469 ntBASIC15.13■□□□□ 0.01
VSX2P58304 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VSX2P58304 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.13■□□□□ 0.01
VSX2P58304 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.13■□□□□ 0.01
VSX2P58304 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VSX2P58304 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.13■□□□□ 0.01
VSX2P58304 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VSX2P58304 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.13■□□□□ 0.01
VSX2P58304 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VSX2P58304 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VSX2P58304 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 AC007950.2-201ENST00000615045 2347 ntBASIC15.12■□□□□ 0.01
VSX2P58304 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 PIN1P1-201ENST00000412108 996 ntBASIC15.12■□□□□ 0.01
VSX2P58304 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 AL132655.2-201ENST00000596276 594 ntBASIC15.12■□□□□ 0.01
VSX2P58304 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.12■□□□□ 0.01
VSX2P58304 AF228730.6-201ENST00000641497 218 ntBASIC15.12■□□□□ 0.01
VSX2P58304 AC084121.3-201ENST00000641716 218 ntBASIC15.12■□□□□ 0.01
VSX2P58304 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 PRAL-201ENST00000624952 3286 ntBASIC15.12■□□□□ 0.01
VSX2P58304 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VSX2P58304 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.12■□□□□ 0.01
VSX2P58304 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VSX2P58304 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
VSX2P58304 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.11■□□□□ 0.01
VSX2P58304 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 AL607033.1-201ENST00000623900 1599 ntBASIC15.11■□□□□ 0.01
VSX2P58304 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VSX2P58304 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.11■□□□□ 0.01
VSX2P58304 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
VSX2P58304 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.11■□□□□ 0.01
VSX2P58304 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 AL035633.1-201ENST00000406139 838 ntBASIC15.11■□□□□ 0.01
VSX2P58304 AC074338.1-201ENST00000416825 156 ntBASIC15.11■□□□□ 0.01
VSX2P58304 AC136604.1-201ENST00000418535 575 ntBASIC15.11■□□□□ 0.01
VSX2P58304 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.11■□□□□ 0.01
VSX2P58304 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 TPRX2P-201ENST00000535362 881 ntBASIC15.11■□□□□ 0.01
VSX2P58304 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 AC097359.3-201ENST00000603982 1210 ntBASIC15.11■□□□□ 0.01
VSX2P58304 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VSX2P58304 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.11■□□□□ 0.01
VSX2P58304 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms