Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VCPP55072 BTBD7P1-201ENST00000447253 1453 ntBASIC16.92■□□□□ 0.3
VCPP55072 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VCPP55072 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VCPP55072 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 SLC7A15P-201ENST00000424028 1363 ntBASIC16.91■□□□□ 0.3
VCPP55072 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.91■□□□□ 0.3
VCPP55072 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VCPP55072 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 AC092506.1-202ENST00000401022 528 ntBASIC16.91■□□□□ 0.3
VCPP55072 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.91■□□□□ 0.3
VCPP55072 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.91■□□□□ 0.3
VCPP55072 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.91■□□□□ 0.3
VCPP55072 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.91■□□□□ 0.3
VCPP55072 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.91■□□□□ 0.3
VCPP55072 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VCPP55072 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.91■□□□□ 0.3
VCPP55072 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VCPP55072 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.91■□□□□ 0.3
VCPP55072 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.9■□□□□ 0.3
VCPP55072 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.9■□□□□ 0.3
VCPP55072 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 AL353705.2-201ENST00000428243 662 ntBASIC16.9■□□□□ 0.3
VCPP55072 AC098859.1-201ENST00000502915 1238 ntBASIC16.9■□□□□ 0.3
VCPP55072 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 RN7SL828P-201ENST00000607615 303 ntBASIC16.9■□□□□ 0.3
VCPP55072 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VCPP55072 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VCPP55072 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VCPP55072 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
VCPP55072 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.89■□□□□ 0.3
VCPP55072 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCPP55072 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCPP55072 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCPP55072 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VCPP55072 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
VCPP55072 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCPP55072 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VCPP55072 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
VCPP55072 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VCPP55072 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.89■□□□□ 0.29
VCPP55072 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms