Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIMK1P53667 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIMK1P53667 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIMK1P53667 AC092384.3-202ENST00000564646 2873 ntBASIC15.53■□□□□ 0.08
LIMK1P53667 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LIMK1P53667 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.53■□□□□ 0.08
LIMK1P53667 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
LIMK1P53667 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.52■□□□□ 0.08
LIMK1P53667 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.52■□□□□ 0.08
LIMK1P53667 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
LIMK1P53667 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
LIMK1P53667 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
LIMK1P53667 AC007969.1-201ENST00000433675 447 ntBASIC15.52■□□□□ 0.08
LIMK1P53667 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.52■□□□□ 0.08
LIMK1P53667 RPS2P36-201ENST00000456516 831 ntBASIC15.52■□□□□ 0.08
LIMK1P53667 AC093433.1-201ENST00000458048 571 ntBASIC15.52■□□□□ 0.08
LIMK1P53667 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.52■□□□□ 0.08
LIMK1P53667 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIMK1P53667 AP006547.1-201ENST00000563435 692 ntBASIC15.52■□□□□ 0.08
LIMK1P53667 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.52■□□□□ 0.08
LIMK1P53667 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.52■□□□□ 0.08
LIMK1P53667 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
LIMK1P53667 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LIMK1P53667 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIMK1P53667 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LIMK1P53667 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 TOMM22P5-201ENST00000416399 439 ntBASIC15.51■□□□□ 0.07
LIMK1P53667 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.51■□□□□ 0.07
LIMK1P53667 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 EIF4HP1-201ENST00000453115 687 ntBASIC15.51■□□□□ 0.07
LIMK1P53667 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.51■□□□□ 0.07
LIMK1P53667 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.51■□□□□ 0.07
LIMK1P53667 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.51■□□□□ 0.07
LIMK1P53667 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 GNRHR2-203ENST00000581100 1187 ntBASIC15.51■□□□□ 0.07
LIMK1P53667 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.51■□□□□ 0.07
LIMK1P53667 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.51■□□□□ 0.07
LIMK1P53667 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.51■□□□□ 0.07
LIMK1P53667 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.51■□□□□ 0.07
LIMK1P53667 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LIMK1P53667 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIMK1P53667 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms