Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.6■□□□□ 0.89
HOXC9P31274 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
HOXC9P31274 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC20.6■□□□□ 0.89
HOXC9P31274 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 AP001258.2-201ENST00000529891 490 ntBASIC20.6■□□□□ 0.89
HOXC9P31274 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 AL096828.3-201ENST00000615354 462 ntBASIC20.6■□□□□ 0.89
HOXC9P31274 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 AL603832.2-201ENST00000566195 2125 ntBASIC20.6■□□□□ 0.89
HOXC9P31274 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HOXC9P31274 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC9P31274 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC9P31274 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC9P31274 AC015818.8-201ENST00000587907 1519 ntBASIC20.59■□□□□ 0.89
HOXC9P31274 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HOXC9P31274 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 OARD1-212ENST00000482515 832 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC9P31274 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
HOXC9P31274 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC9P31274 AP006547.1-201ENST00000563435 692 ntBASIC20.59■□□□□ 0.89
HOXC9P31274 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC9P31274 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC9P31274 AC068587.10-201ENST00000641210 219 ntBASIC20.59■□□□□ 0.89
HOXC9P31274 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC9P31274 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.59■□□□□ 0.89
HOXC9P31274 AL158070.2-201ENST00000623713 1621 ntBASIC20.59■□□□□ 0.89
HOXC9P31274 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20.59■□□□□ 0.89
HOXC9P31274 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HOXC9P31274 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC9P31274 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC9P31274 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 AC018735.1-201ENST00000437208 1502 ntBASIC20.58■□□□□ 0.89
HOXC9P31274 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HOXC9P31274 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC9P31274 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.58■□□□□ 0.89
HOXC9P31274 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC9P31274 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.58■□□□□ 0.89
HOXC9P31274 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC9P31274 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.58■□□□□ 0.89
HOXC9P31274 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HOXC9P31274 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC9P31274 ENPP7P14-201ENST00000621765 1040 ntBASIC20.58■□□□□ 0.89
HOXC9P31274 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.58■□□□□ 0.89
HOXC9P31274 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.58■□□□□ 0.89
HOXC9P31274 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 AL354989.2-201ENST00000435838 1540 ntBASIC20.58■□□□□ 0.88
HOXC9P31274 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC20.58■□□□□ 0.88
HOXC9P31274 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
HOXC9P31274 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
HOXC9P31274 AC024909.3-201ENST00000611513 2257 ntBASIC20.57■□□□□ 0.88
HOXC9P31274 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
HOXC9P31274 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 TPM3P8-201ENST00000330554 643 ntBASIC20.57■□□□□ 0.88
HOXC9P31274 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC9P31274 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 KRT8P14-201ENST00000414254 1442 ntBASIC20.57■□□□□ 0.88
HOXC9P31274 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC9P31274 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms