Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.75□□□□□ -0.21
COL8A1P27658 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.75□□□□□ -0.21
COL8A1P27658 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.75□□□□□ -0.21
COL8A1P27658 MIR3907-201ENST00000579424 151 ntBASIC13.75□□□□□ -0.21
COL8A1P27658 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL8A1P27658 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL8A1P27658 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL8A1P27658 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL8A1P27658 AC015818.8-201ENST00000587907 1519 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 REXO1L8P-201ENST00000604378 1897 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 TARDBPP1-201ENST00000442013 1203 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 EEF1DP6-201ENST00000449232 372 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.74□□□□□ -0.21
COL8A1P27658 SPTLC1P5-201ENST00000450718 252 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.74□□□□□ -0.21
COL8A1P27658 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
COL8A1P27658 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 AC092068.3-201ENST00000587894 2016 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 PCDHB17P-201ENST00000539533 2393 ntBASIC13.74□□□□□ -0.21
COL8A1P27658 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.74□□□□□ -0.21
COL8A1P27658 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL8A1P27658 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL8A1P27658 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.73□□□□□ -0.21
COL8A1P27658 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL8A1P27658 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.73□□□□□ -0.21
COL8A1P27658 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL8A1P27658 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms