Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.19■□□□□ 0.18
HMGA1P17096 CNN2P8-201ENST00000421872 913 ntBASIC16.19■□□□□ 0.18
HMGA1P17096 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
HMGA1P17096 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGA1P17096 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGA1P17096 AC025279.2-201ENST00000569730 653 ntBASIC16.19■□□□□ 0.18
HMGA1P17096 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.19■□□□□ 0.18
HMGA1P17096 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGA1P17096 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 AL513523.2-202ENST00000427283 2040 ntBASIC16.19■□□□□ 0.18
HMGA1P17096 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGA1P17096 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGA1P17096 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 AL391005.1-201ENST00000623953 2435 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 AC099398.1-201ENST00000567919 2776 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 AC092127.1-201ENST00000567093 3455 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HMGA1P17096 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 AC026954.1-201ENST00000429771 1293 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.18■□□□□ 0.18
HMGA1P17096 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 AC092658.1-201ENST00000505836 891 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 RNA5SP412-201ENST00000516234 123 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.18■□□□□ 0.18
HMGA1P17096 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HMGA1P17096 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.18■□□□□ 0.18
HMGA1P17096 AL138709.1-201ENST00000614840 1693 ntBASIC16.18■□□□□ 0.18
HMGA1P17096 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGA1P17096 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGA1P17096 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGA1P17096 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 AC145423.3-201ENST00000615987 467 ntBASIC16.17■□□□□ 0.18
HMGA1P17096 RHOXF1P1-202ENST00000635473 501 ntBASIC16.17■□□□□ 0.18
HMGA1P17096 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGA1P17096 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGA1P17096 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HMGA1P17096 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
HMGA1P17096 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms