Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR658-201ENST00000385210 100 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.25■□□□□ 0.03
HOXC4P09017 BCRP2-202ENST00000447763 634 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 AC114812.1-204ENST00000449669 728 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 CROCCP4-201ENST00000457096 498 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 BCRP6-201ENST00000510112 632 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 BCRP7-201ENST00000511549 544 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 AC104989.1-201ENST00000519711 778 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 AP000812.2-201ENST00000538934 718 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.25■□□□□ 0.03
HOXC4P09017 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 COX11-210ENST00000639671 696 ntBASIC15.25■□□□□ 0.03
HOXC4P09017 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HOXC4P09017 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 AC093525.8-201ENST00000624099 1342 ntBASIC15.24■□□□□ 0.03
HOXC4P09017 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HOXC4P09017 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.24■□□□□ 0.03
HOXC4P09017 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
HOXC4P09017 AC004066.1-201ENST00000502488 802 ntBASIC15.24■□□□□ 0.03
HOXC4P09017 KRT18P25-201ENST00000508931 1278 ntBASIC15.24■□□□□ 0.03
HOXC4P09017 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 MIR6775-201ENST00000617557 69 ntBASIC15.24■□□□□ 0.03
HOXC4P09017 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HOXC4P09017 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HOXC4P09017 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.24■□□□□ 0.03
HOXC4P09017 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HOXC4P09017 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HOXC4P09017 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 AL365203.3-201ENST00000609742 2057 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms