Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A1P02462 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A1P02462 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A1P02462 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A1P02462 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A1P02462 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A1P02462 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A1P02462 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL4A1P02462 FAM8A4P-201ENST00000435433 1213 ntBASIC18.86■□□□□ 0.61
COL4A1P02462 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A1P02462 AC114812.1-204ENST00000449669 728 ntBASIC18.86■□□□□ 0.61
COL4A1P02462 AC004898.1-201ENST00000451057 766 ntBASIC18.86■□□□□ 0.61
COL4A1P02462 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A1P02462 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL4A1P02462 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL4A1P02462 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A1P02462 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A1P02462 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A1P02462 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A1P02462 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
COL4A1P02462 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A1P02462 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A1P02462 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL4A1P02462 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A1P02462 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A1P02462 CD8B2-202ENST00000417670 633 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A1P02462 SCARNA20.5-201ENST00000516991 142 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 DUX4L47-201ENST00000566374 394 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
COL4A1P02462 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A1P02462 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 AC055811.4-201ENST00000624039 1754 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
COL4A1P02462 REXO1L4P-201ENST00000605109 1937 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A1P02462 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A1P02462 BX284668.4-201ENST00000453917 508 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A1P02462 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 AP001002.3-201ENST00000623482 206 ntBASIC18.85■□□□□ 0.61
COL4A1P02462 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A1P02462 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
COL4A1P02462 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A1P02462 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A1P02462 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 AC091046.1-201ENST00000331871 207 ntBASIC18.84■□□□□ 0.61
COL4A1P02462 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 NKAIN1P1-201ENST00000435754 582 ntBASIC18.84■□□□□ 0.61
COL4A1P02462 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A1P02462 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A1P02462 AC004066.1-201ENST00000502488 802 ntBASIC18.84■□□□□ 0.61
COL4A1P02462 COX5BP1-201ENST00000507622 393 ntBASIC18.84■□□□□ 0.61
COL4A1P02462 ADM-202ENST00000524948 584 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A1P02462 AP001258.2-201ENST00000529891 490 ntBASIC18.84■□□□□ 0.61
COL4A1P02462 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC18.84■□□□□ 0.61
COL4A1P02462 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A1P02462 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A1P02462 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A1P02462 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms