Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
COL3A1P02461 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.45■□□□□ 0.86
COL3A1P02461 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 AC126365.1-201ENST00000578585 1514 ntBASIC20.45■□□□□ 0.86
COL3A1P02461 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 LCK-206ENST00000373564 2137 ntTSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC20.44■□□□□ 0.86
COL3A1P02461 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 AL033527.4-201ENST00000641026 673 ntBASIC20.44■□□□□ 0.86
COL3A1P02461 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 AL157414.3-201ENST00000624276 1954 ntBASIC20.44■□□□□ 0.86
COL3A1P02461 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC20.44■□□□□ 0.86
COL3A1P02461 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL3A1P02461 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 AC087481.3-201ENST00000602886 1894 ntBASIC20.44■□□□□ 0.86
COL3A1P02461 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC20.44■□□□□ 0.86
COL3A1P02461 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC20.44■□□□□ 0.86
COL3A1P02461 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.43■□□□□ 0.86
COL3A1P02461 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC20.43■□□□□ 0.86
COL3A1P02461 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.43■□□□□ 0.86
COL3A1P02461 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 FOS-202ENST00000535987 1402 ntTSL 2 BASIC20.43■□□□□ 0.86
COL3A1P02461 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 AC023024.2-201ENST00000623561 1993 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 AC105917.1-201ENST00000506637 2539 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL3A1P02461 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.43■□□□□ 0.86
COL3A1P02461 FAM197Y7-201ENST00000432892 766 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 KRT18P25-201ENST00000508931 1278 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.43■□□□□ 0.86
COL3A1P02461 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.43■□□□□ 0.86
COL3A1P02461 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 ECM1P1-201ENST00000604092 1279 ntBASIC20.43■□□□□ 0.86
COL3A1P02461 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.43■□□□□ 0.86
COL3A1P02461 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
COL3A1P02461 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC20.42■□□□□ 0.86
COL3A1P02461 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC20.42■□□□□ 0.86
COL3A1P02461 AP000845.1-201ENST00000581677 2131 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms