Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 AL645939.2-201ENST00000427340 991 ntBASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 BANF1P1-201ENST00000553684 263 ntBASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 AC090079.2-201ENST00000575289 768 ntBASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 AL355816.2-201ENST00000610049 647 ntBASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 AC134684.3-201ENST00000641758 218 ntBASIC15.77■□□□□ 0.12
VPS9D1Q9Y2B5 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 AC126755.1-201ENST00000525846 6405 ntBASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 AC068418.2-201ENST00000577309 3703 ntBASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS9D1Q9Y2B5 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC104640.1-201ENST00000562617 2109 ntBASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC092384.3-202ENST00000564646 2873 ntBASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 SERBP1P3-201ENST00000459980 809 ntBASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 PCDHA3-202ENST00000532566 4594 ntBASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 SSR4P1-203ENST00000599569 2260 ntBASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS9D1Q9Y2B5 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC092850.2-201ENST00000623821 2697 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC126177.1-201ENST00000547829 2218 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 MTND6P24-201ENST00000440466 518 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 HNRNPUP1-201ENST00000554987 333 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 MIR4453-201ENST00000584019 89 ntBASIC15.75■□□□□ 0.11
VPS9D1Q9Y2B5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms