Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 AC103702.1-201ENST00000548801 2630 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 TARDBPP1-201ENST00000442013 1203 ntBASIC15.09■□□□□ 0.01
BRF2Q9HAW0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 LINC00628-201ENST00000628516 1289 ntBASIC15.09■□□□□ 0.01
BRF2Q9HAW0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
BRF2Q9HAW0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
BRF2Q9HAW0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
BRF2Q9HAW0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.08■□□□□ 0
BRF2Q9HAW0 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.08■□□□□ 0
BRF2Q9HAW0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 KRT18P13-201ENST00000400056 1290 ntBASIC15.08■□□□□ 0
BRF2Q9HAW0 AL080243.2-201ENST00000418783 582 ntBASIC15.08■□□□□ 0
BRF2Q9HAW0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.08■□□□□ 0
BRF2Q9HAW0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.08■□□□□ 0
BRF2Q9HAW0 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.08■□□□□ 0
BRF2Q9HAW0 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.08■□□□□ 0
BRF2Q9HAW0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.08■□□□□ 0
BRF2Q9HAW0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
BRF2Q9HAW0 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.08■□□□□ 0
BRF2Q9HAW0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.08■□□□□ 0
BRF2Q9HAW0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
BRF2Q9HAW0 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
BRF2Q9HAW0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.08■□□□□ 0
BRF2Q9HAW0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
BRF2Q9HAW0 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.07■□□□□ 0
BRF2Q9HAW0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.07■□□□□ 0
BRF2Q9HAW0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms