Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RPS8P6-201ENST00000426177 609 ntBASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 ALG1L5P-201ENST00000482043 771 ntBASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 AC040169.1-201ENST00000565382 521 ntBASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 AC112693.3-201ENST00000624819 1983 ntBASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLHC1Q8NHS4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 PCDHA3-202ENST00000532566 4594 ntBASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 FAM220BP-201ENST00000377689 816 ntBASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLHC1Q8NHS4 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLHC1Q8NHS4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLHC1Q8NHS4 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLHC1Q8NHS4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLHC1Q8NHS4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLHC1Q8NHS4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CYP4F24P-201ENST00000586049 1580 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC127383.1-201ENST00000444697 1800 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms