Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 ME2P1-201ENST00000426028 1970 ntBASIC21.07■□□□□ 0.96
NPHP3Q7Z494 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AL645937.2-201ENST00000396808 931 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 POM121L8P-201ENST00000417732 1281 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 POM121L9P-203ENST00000441984 1285 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC234782.1-201ENST00000451950 919 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC100850.1-201ENST00000506768 649 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 SYT17-208ENST00000568433 812 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC025181.2-201ENST00000606994 802 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 AC011477.6-201ENST00000604980 1927 ntBASIC21.06■□□□□ 0.96
NPHP3Q7Z494 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP3Q7Z494 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 AL355334.1-201ENST00000417713 215 ntBASIC21.05■□□□□ 0.96
NPHP3Q7Z494 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 AC012618.1-201ENST00000461223 412 ntBASIC21.05■□□□□ 0.96
NPHP3Q7Z494 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 AL391280.1-201ENST00000506969 1062 ntBASIC21.05■□□□□ 0.96
NPHP3Q7Z494 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC21.05■□□□□ 0.96
NPHP3Q7Z494 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 MIR3147-201ENST00000577811 66 ntBASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AMT-224ENST00000635808 1610 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 LBH-202ENST00000401506 485 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms