Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC103702.1-201ENST00000548801 2630 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 KRT18P64-201ENST00000434946 1219 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 AC114501.2-201ENST00000439631 535 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 RPL13P2-201ENST00000440687 659 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 UGT1A2P-201ENST00000454886 866 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.29□□□□□ -0.12
FOXF1Q12946 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.29□□□□□ -0.12
FOXF1Q12946 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 AC004461.2-201ENST00000629517 803 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 AF228730.6-201ENST00000641497 218 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 AC084121.3-201ENST00000641716 218 ntBASIC14.29□□□□□ -0.12
FOXF1Q12946 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
FOXF1Q12946 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXF1Q12946 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
FOXF1Q12946 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXF1Q12946 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 AC068587.6-202ENST00000641839 5619 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
FOXF1Q12946 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 FAM8A3P-201ENST00000427218 844 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 BCRP1-201ENST00000444246 691 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 AC127383.1-201ENST00000444697 1800 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 BTBD7P1-201ENST00000447253 1453 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXF1Q12946 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms