Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.85□□□□□ -0.35
LMO4P61968 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.85□□□□□ -0.35
LMO4P61968 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC12.85□□□□□ -0.35
LMO4P61968 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
LMO4P61968 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
LMO4P61968 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.85□□□□□ -0.35
LMO4P61968 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LMO4P61968 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LMO4P61968 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.84□□□□□ -0.35
LMO4P61968 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LMO4P61968 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 MPV17-206ENST00000402722 827 ntTSL 3 BASIC12.84□□□□□ -0.35
LMO4P61968 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 C2orf27AP3-201ENST00000434123 579 ntBASIC12.84□□□□□ -0.35
LMO4P61968 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.84□□□□□ -0.35
LMO4P61968 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 AC079316.1-201ENST00000548397 411 ntBASIC12.84□□□□□ -0.35
LMO4P61968 KRT90P-201ENST00000549264 1064 ntBASIC12.84□□□□□ -0.35
LMO4P61968 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.84□□□□□ -0.35
LMO4P61968 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 TECR-220ENST00000600083 1204 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 AC025181.2-201ENST00000606994 802 ntBASIC12.84□□□□□ -0.35
LMO4P61968 AL354718.3-201ENST00000616414 581 ntBASIC12.84□□□□□ -0.35
LMO4P61968 BX539320.1-201ENST00000623759 877 ntBASIC12.84□□□□□ -0.35
LMO4P61968 CR382287.1-201ENST00000623954 586 ntBASIC12.84□□□□□ -0.35
LMO4P61968 RHOXF1P1-202ENST00000635473 501 ntBASIC12.84□□□□□ -0.35
LMO4P61968 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LMO4P61968 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LMO4P61968 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.84□□□□□ -0.35
LMO4P61968 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC12.84□□□□□ -0.35
LMO4P61968 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.35
LMO4P61968 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
LMO4P61968 AC024909.3-201ENST00000611513 2257 ntBASIC12.83□□□□□ -0.35
LMO4P61968 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LMO4P61968 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.83□□□□□ -0.35
LMO4P61968 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms