Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.63■□□□□ 0.89
HOXC9P31274 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC20.63■□□□□ 0.89
HOXC9P31274 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HOXC9P31274 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HOXC9P31274 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC20.63■□□□□ 0.89
HOXC9P31274 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC20.63■□□□□ 0.89
HOXC9P31274 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.63■□□□□ 0.89
HOXC9P31274 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.63■□□□□ 0.89
HOXC9P31274 AL022328.3-201ENST00000607943 679 ntBASIC20.63■□□□□ 0.89
HOXC9P31274 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
HOXC9P31274 AL008638.5-201ENST00000623814 1298 ntBASIC20.63■□□□□ 0.89
HOXC9P31274 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HOXC9P31274 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HOXC9P31274 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
HOXC9P31274 RPS3-201ENST00000278572 907 ntTSL 3 BASIC20.62■□□□□ 0.89
HOXC9P31274 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 NUS1P3-201ENST00000423502 862 ntBASIC20.62■□□□□ 0.89
HOXC9P31274 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.62■□□□□ 0.89
HOXC9P31274 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 EEF1DP1-201ENST00000585891 896 ntBASIC20.62■□□□□ 0.89
HOXC9P31274 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.62■□□□□ 0.89
HOXC9P31274 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.62■□□□□ 0.89
HOXC9P31274 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 AC007787.1-201ENST00000588095 1583 ntBASIC20.62■□□□□ 0.89
HOXC9P31274 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HOXC9P31274 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.62■□□□□ 0.89
HOXC9P31274 AC006449.5-201ENST00000610658 2098 ntBASIC20.62■□□□□ 0.89
HOXC9P31274 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC9P31274 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC9P31274 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC9P31274 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 AL139094.1-201ENST00000405549 1188 ntBASIC20.61■□□□□ 0.89
HOXC9P31274 MTX1P1-201ENST00000440904 838 ntBASIC20.61■□□□□ 0.89
HOXC9P31274 CNN2P10-201ENST00000443067 918 ntBASIC20.61■□□□□ 0.89
HOXC9P31274 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.61■□□□□ 0.89
HOXC9P31274 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC9P31274 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HOXC9P31274 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.61■□□□□ 0.89
HOXC9P31274 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HOXC9P31274 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.61■□□□□ 0.89
HOXC9P31274 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
HOXC9P31274 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 AC084364.1-201ENST00000551967 1556 ntBASIC20.6■□□□□ 0.89
HOXC9P31274 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HOXC9P31274 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HOXC9P31274 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.6■□□□□ 0.89
HOXC9P31274 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms