Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC23.13■■□□□ 1.29
RAPGEF3O95398 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RAPGEF3O95398 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RAPGEF3O95398 AC106820.2-201ENST00000563775 3264 ntBASIC23.13■■□□□ 1.29
RAPGEF3O95398 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC23.13■■□□□ 1.29
RAPGEF3O95398 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
RAPGEF3O95398 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RAPGEF3O95398 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RAPGEF3O95398 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
RAPGEF3O95398 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 RPL18P13-201ENST00000478088 569 ntBASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 DNM1P30-201ENST00000563586 452 ntBASIC23.12■■□□□ 1.29
RAPGEF3O95398 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC138466.3-201ENST00000619983 221 ntBASIC23.12■■□□□ 1.29
RAPGEF3O95398 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
RAPGEF3O95398 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RAPGEF3O95398 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 AC090857.1-201ENST00000527400 390 ntBASIC23.11■■□□□ 1.29
RAPGEF3O95398 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 MIR4649-201ENST00000582839 64 ntBASIC23.11■■□□□ 1.29
RAPGEF3O95398 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 IRF3-215ENST00000596822 823 ntTSL 3 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC23.11■■□□□ 1.29
RAPGEF3O95398 ALOX12P2-203ENST00000570921 1945 ntBASIC23.11■■□□□ 1.29
RAPGEF3O95398 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RAPGEF3O95398 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC007613.1-201ENST00000572811 2597 ntBASIC23.1■■□□□ 1.29
RAPGEF3O95398 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AL645937.2-201ENST00000396808 931 ntBASIC23.1■■□□□ 1.29
RAPGEF3O95398 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 FOS-204ENST00000554617 796 ntTSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 NAT9-211ENST00000580632 799 ntTSL 3 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC103810.10-201ENST00000606504 343 ntBASIC23.1■■□□□ 1.29
RAPGEF3O95398 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RAPGEF3O95398 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
RAPGEF3O95398 AC074138.1-201ENST00000611182 1303 ntBASIC23.09■■□□□ 1.29
RAPGEF3O95398 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC23.09■■□□□ 1.29
RAPGEF3O95398 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RAPGEF3O95398 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RAPGEF3O95398 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RAPGEF3O95398 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RAPGEF3O95398 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC23.09■■□□□ 1.29
RAPGEF3O95398 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC23.09■■□□□ 1.29
RAPGEF3O95398 OR2K2-202ENST00000374428 1038 ntBASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms