Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 FTH1P14-201ENST00000482930 551 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 SLED1-202ENST00000512051 380 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP1O15259 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP1O15259 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP1O15259 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.88■□□□□ 0.77
NPHP1O15259 AC243960.2-201ENST00000600996 747 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.88■□□□□ 0.77
NPHP1O15259 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.88■□□□□ 0.77
NPHP1O15259 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.88■□□□□ 0.77
NPHP1O15259 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 RNF216P1-203ENST00000404404 2427 ntBASIC19.88■□□□□ 0.77
NPHP1O15259 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP1O15259 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP1O15259 AC046158.3-201ENST00000624947 2558 ntBASIC19.87■□□□□ 0.77
NPHP1O15259 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.87■□□□□ 0.77
NPHP1O15259 AC016694.1-201ENST00000434179 700 ntBASIC19.87■□□□□ 0.77
NPHP1O15259 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
NPHP1O15259 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
NPHP1O15259 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.87■□□□□ 0.77
NPHP1O15259 AC124283.3-201ENST00000570869 594 ntBASIC19.87■□□□□ 0.77
NPHP1O15259 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP1O15259 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NPHP1O15259 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP1O15259 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NPHP1O15259 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP1O15259 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP1O15259 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 AC092933.1-201ENST00000393644 945 ntBASIC19.86■□□□□ 0.77
NPHP1O15259 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 KRT18P64-201ENST00000434946 1219 ntBASIC19.86■□□□□ 0.77
NPHP1O15259 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.86■□□□□ 0.77
NPHP1O15259 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.86■□□□□ 0.77
NPHP1O15259 AC103810.3-201ENST00000583567 96 ntBASIC19.86■□□□□ 0.77
NPHP1O15259 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
NPHP1O15259 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP1O15259 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms