Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AC091812.2-201ENST00000619081 385 ntBASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AKAP8P1-201ENST00000434743 1349 ntBASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 AL161772.1-201ENST00000610494 4412 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 MCCD1P2-201ENST00000423228 335 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 AL671277.1-201ENST00000429656 993 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 FAM58CP-201ENST00000435741 640 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 POLD2P1-201ENST00000511220 997 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 MIR600HG-201ENST00000449175 5984 ntBASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCDC39Q9UFE4 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 FAM86C2P-203ENST00000528684 1004 ntBASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
CCDC39Q9UFE4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms