Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 FAM215A-202ENST00000632077 792 ntBASIC15.68■□□□□ 0.1
SSU72Q9NP77 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 CYP4F24P-201ENST00000586049 1580 ntBASIC15.67■□□□□ 0.1
SSU72Q9NP77 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 BX640514.1-201ENST00000583223 1918 ntBASIC15.67■□□□□ 0.1
SSU72Q9NP77 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 AC136604.1-201ENST00000418535 575 ntBASIC15.67■□□□□ 0.1
SSU72Q9NP77 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 IFNL4P1-201ENST00000607083 540 ntBASIC15.67■□□□□ 0.1
SSU72Q9NP77 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SSU72Q9NP77 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.67■□□□□ 0.1
SSU72Q9NP77 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SSU72Q9NP77 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
SSU72Q9NP77 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.66■□□□□ 0.1
SSU72Q9NP77 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SSU72Q9NP77 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SSU72Q9NP77 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
SSU72Q9NP77 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms