Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 AL139400.1-201ENST00000366220 510 ntBASIC16.35■□□□□ 0.21
PCDH9Q9HC56 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 EEF1DP4-201ENST00000446006 880 ntBASIC16.35■□□□□ 0.21
PCDH9Q9HC56 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 AC018529.1-201ENST00000613063 361 ntBASIC16.35■□□□□ 0.21
PCDH9Q9HC56 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 TCAF2P1-201ENST00000291129 2421 ntBASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AC109322.1-201ENST00000524499 1264 ntBASIC16.34■□□□□ 0.21
PCDH9Q9HC56 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AL450472.2-201ENST00000603663 1156 ntBASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 NORAD-201ENST00000565493 5339 ntBASIC16.34■□□□□ 0.21
PCDH9Q9HC56 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 KRT8P44-201ENST00000441609 1350 ntBASIC16.34■□□□□ 0.21
PCDH9Q9HC56 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.34■□□□□ 0.21
PCDH9Q9HC56 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PCDH9Q9HC56 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.33■□□□□ 0.21
PCDH9Q9HC56 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.33■□□□□ 0.21
PCDH9Q9HC56 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.33■□□□□ 0.2
PCDH9Q9HC56 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 AL512356.2-201ENST00000546955 174 ntBASIC16.33■□□□□ 0.2
PCDH9Q9HC56 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 CYP4F24P-201ENST00000586049 1580 ntBASIC16.33■□□□□ 0.2
PCDH9Q9HC56 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCDH9Q9HC56 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms