Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 RPS8P6-201ENST00000426177 609 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 AL645939.2-201ENST00000427340 991 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AC009078.2-202ENST00000463353 338 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 RN7SL589P-201ENST00000481268 310 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AC099522.2-201ENST00000607001 744 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AC138035.3-201ENST00000622706 2791 ntBASIC11.9□□□□□ -0.5
LINC00477Q96M19 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00477Q96M19 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00477Q96M19 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00477Q96M19 TKT-202ENST00000423516 2075 ntTSL 2 BASIC11.9□□□□□ -0.51
LINC00477Q96M19 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.9□□□□□ -0.51
LINC00477Q96M19 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00477Q96M19 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC11.9□□□□□ -0.51
LINC00477Q96M19 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC11.9□□□□□ -0.51
LINC00477Q96M19 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC11.9□□□□□ -0.51
LINC00477Q96M19 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 PHKG1P2-201ENST00000457537 863 ntBASIC11.89□□□□□ -0.51
LINC00477Q96M19 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 MIR4313-201ENST00000580760 101 ntBASIC11.89□□□□□ -0.51
LINC00477Q96M19 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 AL450472.2-201ENST00000603663 1156 ntBASIC11.89□□□□□ -0.51
LINC00477Q96M19 AC027601.4-201ENST00000611259 610 ntBASIC11.89□□□□□ -0.51
LINC00477Q96M19 AL513190.1-201ENST00000621254 727 ntBASIC11.89□□□□□ -0.51
LINC00477Q96M19 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00477Q96M19 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms