Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE4Q8N205 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE4Q8N205 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 AC112504.1-201ENST00000623415 1841 ntBASIC19.47■□□□□ 0.71
SYNE4Q8N205 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 CNN2P8-201ENST00000421872 913 ntBASIC19.47■□□□□ 0.71
SYNE4Q8N205 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE4Q8N205 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE4Q8N205 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AL138799.1-201ENST00000448213 1675 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC022188.1-201ENST00000620960 1664 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC025279.2-201ENST00000569730 653 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 AL118558.3-201ENST00000607414 1079 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 AC145423.3-201ENST00000615987 467 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 RHOXF1P1-202ENST00000635473 501 ntBASIC19.46■□□□□ 0.71
SYNE4Q8N205 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE4Q8N205 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC084018.2-201ENST00000613093 2607 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 FAM197Y7-201ENST00000432892 766 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 KRT8P13-201ENST00000463294 1010 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC078819.1-201ENST00000547454 765 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC012085.1-201ENST00000548270 765 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 DUX4L45-201ENST00000566406 1057 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 AL138709.1-201ENST00000614840 1693 ntBASIC19.45■□□□□ 0.7
SYNE4Q8N205 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE4Q8N205 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
SYNE4Q8N205 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms