Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCPP55072 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCPP55072 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCPP55072 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.97■□□□□ 0.31
VCPP55072 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 AP005117.1-202ENST00000581724 1908 ntBASIC16.96■□□□□ 0.31
VCPP55072 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VCPP55072 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.96■□□□□ 0.31
VCPP55072 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.96■□□□□ 0.31
VCPP55072 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.96■□□□□ 0.31
VCPP55072 AC093004.1-201ENST00000508850 424 ntBASIC16.96■□□□□ 0.31
VCPP55072 DOC2GP-202ENST00000514950 1163 ntBASIC16.96■□□□□ 0.31
VCPP55072 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.96■□□□□ 0.31
VCPP55072 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.96■□□□□ 0.31
VCPP55072 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.96■□□□□ 0.31
VCPP55072 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.96■□□□□ 0.31
VCPP55072 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.96■□□□□ 0.31
VCPP55072 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VCPP55072 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.96■□□□□ 0.31
VCPP55072 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCPP55072 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.96■□□□□ 0.3
VCPP55072 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.3
VCPP55072 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.96■□□□□ 0.3
VCPP55072 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
VCPP55072 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.96■□□□□ 0.3
VCPP55072 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VCPP55072 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.96■□□□□ 0.3
VCPP55072 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
VCPP55072 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 AL035456.1-201ENST00000456064 1369 ntBASIC16.95■□□□□ 0.3
VCPP55072 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 ANKRD19P-201ENST00000338192 862 ntBASIC16.95■□□□□ 0.3
VCPP55072 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.95■□□□□ 0.3
VCPP55072 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.95■□□□□ 0.3
VCPP55072 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.95■□□□□ 0.3
VCPP55072 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.95■□□□□ 0.3
VCPP55072 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.95■□□□□ 0.3
VCPP55072 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
VCPP55072 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VCPP55072 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCPP55072 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VCPP55072 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.94■□□□□ 0.3
VCPP55072 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.94■□□□□ 0.3
VCPP55072 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.94■□□□□ 0.3
VCPP55072 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VCPP55072 HLA-H-201ENST00000383620 1096 ntBASIC16.94■□□□□ 0.3
VCPP55072 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
VCPP55072 CROCCP4-201ENST00000457096 498 ntBASIC16.94■□□□□ 0.3
VCPP55072 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCPP55072 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms