Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 AC117489.1-201ENST00000625169 3217 ntBASIC16.72■□□□□ 0.27
LIG3P49916 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.72■□□□□ 0.27
LIG3P49916 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 FAM86C2P-203ENST00000528684 1004 ntBASIC16.72■□□□□ 0.27
LIG3P49916 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.72■□□□□ 0.27
LIG3P49916 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 AC013467.2-201ENST00000605472 835 ntBASIC16.72■□□□□ 0.27
LIG3P49916 AL513210.1-201ENST00000629608 234 ntBASIC16.72■□□□□ 0.27
LIG3P49916 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.72■□□□□ 0.27
LIG3P49916 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.72■□□□□ 0.27
LIG3P49916 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIG3P49916 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LIG3P49916 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 AC107918.4-201ENST00000641966 3141 ntBASIC16.71■□□□□ 0.27
LIG3P49916 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIG3P49916 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 TIMM8BP1-201ENST00000452384 211 ntBASIC16.71■□□□□ 0.27
LIG3P49916 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.71■□□□□ 0.27
LIG3P49916 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 AP000344.2-201ENST00000512987 629 ntBASIC16.71■□□□□ 0.27
LIG3P49916 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.71■□□□□ 0.27
LIG3P49916 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
LIG3P49916 RARRES2P8-201ENST00000566335 367 ntBASIC16.71■□□□□ 0.27
LIG3P49916 MIR3909-201ENST00000579518 119 ntBASIC16.71■□□□□ 0.27
LIG3P49916 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.71■□□□□ 0.27
LIG3P49916 AC026120.1-201ENST00000611536 926 ntBASIC16.71■□□□□ 0.27
LIG3P49916 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.71■□□□□ 0.27
LIG3P49916 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIG3P49916 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIG3P49916 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
LIG3P49916 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
LIG3P49916 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.71■□□□□ 0.26
LIG3P49916 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
LIG3P49916 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.7■□□□□ 0.26
LIG3P49916 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LIG3P49916 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms