Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HTTP42858 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.33■□□□□ 0.36
HTTP42858 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
HTTP42858 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.33■□□□□ 0.36
HTTP42858 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.33■□□□□ 0.36
HTTP42858 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 AL023803.2-201ENST00000620080 638 ntBASIC17.33■□□□□ 0.36
HTTP42858 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HTTP42858 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HTTP42858 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 POM121L8P-201ENST00000417732 1281 ntBASIC17.32■□□□□ 0.36
HTTP42858 POM121L9P-203ENST00000441984 1285 ntBASIC17.32■□□□□ 0.36
HTTP42858 AC027139.1-201ENST00000565286 951 ntBASIC17.32■□□□□ 0.36
HTTP42858 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 AC080080.1-201ENST00000625121 2420 ntBASIC17.32■□□□□ 0.36
HTTP42858 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HTTP42858 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 AL139094.1-201ENST00000405549 1188 ntBASIC17.32■□□□□ 0.36
HTTP42858 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC17.32■□□□□ 0.36
HTTP42858 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HTTP42858 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC17.32■□□□□ 0.36
HTTP42858 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
HTTP42858 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.32■□□□□ 0.36
HTTP42858 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.32■□□□□ 0.36
HTTP42858 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.32■□□□□ 0.36
HTTP42858 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.32■□□□□ 0.36
HTTP42858 NAGK-204ENST00000443872 878 ntTSL 3 BASIC17.32■□□□□ 0.36
HTTP42858 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.32■□□□□ 0.36
HTTP42858 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC17.32■□□□□ 0.36
HTTP42858 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.32■□□□□ 0.36
HTTP42858 AL132994.2-201ENST00000603120 687 ntBASIC17.32■□□□□ 0.36
HTTP42858 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HTTP42858 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 AC074138.1-201ENST00000611182 1303 ntBASIC17.31■□□□□ 0.36
HTTP42858 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 RN7SKP214-201ENST00000364208 315 ntBASIC17.31■□□□□ 0.36
HTTP42858 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.31■□□□□ 0.36
HTTP42858 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
HTTP42858 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 NOC2LP2-201ENST00000407594 1944 ntBASIC17.31■□□□□ 0.36
HTTP42858 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 ME2P1-201ENST00000426028 1970 ntBASIC17.31■□□□□ 0.36
HTTP42858 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.31■□□□□ 0.36
HTTP42858 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC17.31■□□□□ 0.36
HTTP42858 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 AC021723.1-201ENST00000486306 515 ntBASIC17.31■□□□□ 0.36
HTTP42858 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 AC242376.2-201ENST00000619355 883 ntBASIC17.31■□□□□ 0.36
HTTP42858 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.31■□□□□ 0.36
HTTP42858 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HTTP42858 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HTTP42858 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
HTTP42858 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC17.3■□□□□ 0.36
HTTP42858 EIF3FP3-201ENST00000434851 1086 ntBASIC17.3■□□□□ 0.36
HTTP42858 AL157792.1-201ENST00000488281 530 ntBASIC17.3■□□□□ 0.36
HTTP42858 AC010234.1-201ENST00000494599 870 ntBASIC17.3■□□□□ 0.36
HTTP42858 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.3■□□□□ 0.36
HTTP42858 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms