Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 AP003419.4-201ENST00000616071 517 ntBASIC20.32■□□□□ 0.84
COL18A1P39060 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 AC004899.1-201ENST00000424687 1714 ntBASIC20.32■□□□□ 0.84
COL18A1P39060 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL18A1P39060 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL18A1P39060 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.32■□□□□ 0.84
COL18A1P39060 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL18A1P39060 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL18A1P39060 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 CEP164P1-201ENST00000455142 418 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC20.31■□□□□ 0.84
COL18A1P39060 AL161670.2-201ENST00000557650 1227 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 YRDCP1-201ENST00000621419 643 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 AL596087.1-201ENST00000400979 1969 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
COL18A1P39060 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 AC106794.1-201ENST00000506935 792 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 FADS2-212ENST00000522639 360 ntTSL 5 BASIC20.31■□□□□ 0.84
COL18A1P39060 SYT17-208ENST00000568433 812 ntTSL 3 BASIC20.31■□□□□ 0.84
COL18A1P39060 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC20.31■□□□□ 0.84
COL18A1P39060 FADS2-215ENST00000574708 385 ntTSL 3 BASIC20.31■□□□□ 0.84
COL18A1P39060 AC100757.4-201ENST00000626934 759 ntBASIC20.31■□□□□ 0.84
COL18A1P39060 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL18A1P39060 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.3■□□□□ 0.84
COL18A1P39060 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL18A1P39060 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 AC112504.1-201ENST00000623415 1841 ntBASIC20.3■□□□□ 0.84
COL18A1P39060 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 AC012313.1-201ENST00000593393 3059 ntBASIC20.3■□□□□ 0.84
COL18A1P39060 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.3■□□□□ 0.84
COL18A1P39060 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.3■□□□□ 0.84
COL18A1P39060 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
COL18A1P39060 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 NPPA-201ENST00000376476 728 ntTSL 3 BASIC20.3■□□□□ 0.84
COL18A1P39060 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 AC069218.1-201ENST00000435269 762 ntBASIC20.3■□□□□ 0.84
COL18A1P39060 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC20.3■□□□□ 0.84
COL18A1P39060 AC234782.1-201ENST00000451950 919 ntBASIC20.3■□□□□ 0.84
COL18A1P39060 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.3■□□□□ 0.84
COL18A1P39060 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL18A1P39060 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 AC005332.8-201ENST00000622750 2735 ntBASIC20.3■□□□□ 0.84
COL18A1P39060 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
COL18A1P39060 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL18A1P39060 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL18A1P39060 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL18A1P39060 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL18A1P39060 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms