Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
HMGA1P17096 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.24■□□□□ 0.19
HMGA1P17096 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.24■□□□□ 0.19
HMGA1P17096 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.24■□□□□ 0.19
HMGA1P17096 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 MIR6799-201ENST00000620297 69 ntBASIC16.24■□□□□ 0.19
HMGA1P17096 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HMGA1P17096 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGA1P17096 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGA1P17096 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGA1P17096 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGA1P17096 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AC016694.1-201ENST00000434179 700 ntBASIC16.23■□□□□ 0.19
HMGA1P17096 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 CSF2RBP1-201ENST00000447905 391 ntBASIC16.23■□□□□ 0.19
HMGA1P17096 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGA1P17096 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGA1P17096 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.23■□□□□ 0.19
HMGA1P17096 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGA1P17096 AP005019.2-201ENST00000615104 511 ntBASIC16.23■□□□□ 0.19
HMGA1P17096 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGA1P17096 AC022188.1-201ENST00000620960 1664 ntBASIC16.23■□□□□ 0.19
HMGA1P17096 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AP003680.1-201ENST00000598970 3660 ntBASIC16.23■□□□□ 0.19
HMGA1P17096 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGA1P17096 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGA1P17096 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGA1P17096 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGA1P17096 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.22■□□□□ 0.19
HMGA1P17096 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
HMGA1P17096 FO681548.1-201ENST00000455617 1132 ntBASIC16.22■□□□□ 0.19
HMGA1P17096 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGA1P17096 AL583810.1-201ENST00000553344 1045 ntBASIC16.22■□□□□ 0.19
HMGA1P17096 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.22■□□□□ 0.19
HMGA1P17096 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGA1P17096 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGA1P17096 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HMGA1P17096 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGA1P17096 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGA1P17096 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGA1P17096 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms