Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 AP005019.2-201ENST00000615104 511 ntBASIC15.3■□□□□ 0.04
HOXC4P09017 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HOXC4P09017 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 AC127383.1-201ENST00000444697 1800 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 PCDH8P1-201ENST00000428983 2773 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 AC134312.5-201ENST00000568031 1313 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.29■□□□□ 0.04
HOXC4P09017 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.29■□□□□ 0.04
HOXC4P09017 NUS1P3-201ENST00000423502 862 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.29■□□□□ 0.04
HOXC4P09017 AL355864.2-201ENST00000447420 863 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
HOXC4P09017 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 AP005482.1-201ENST00000563722 1273 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.29■□□□□ 0.04
HOXC4P09017 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HOXC4P09017 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 AC026691.1-201ENST00000602502 2017 ntBASIC15.29■□□□□ 0.04
HOXC4P09017 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HOXC4P09017 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.29■□□□□ 0.04
HOXC4P09017 AC084364.1-201ENST00000551967 1556 ntBASIC15.28■□□□□ 0.04
HOXC4P09017 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HOXC4P09017 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 AC092933.1-201ENST00000393644 945 ntBASIC15.28■□□□□ 0.04
HOXC4P09017 AL645937.2-201ENST00000396808 931 ntBASIC15.28■□□□□ 0.04
HOXC4P09017 MIR1909-201ENST00000411312 80 ntBASIC15.28■□□□□ 0.04
HOXC4P09017 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.28■□□□□ 0.04
HOXC4P09017 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HOXC4P09017 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 BX539320.1-201ENST00000623759 877 ntBASIC15.28■□□□□ 0.04
HOXC4P09017 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.28■□□□□ 0.04
HOXC4P09017 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HOXC4P09017 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.28■□□□□ 0.04
HOXC4P09017 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.27■□□□□ 0.04
HOXC4P09017 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
HOXC4P09017 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms