Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LDLRP01130 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 TSPY16P-201ENST00000449843 468 ntBASIC15.38■□□□□ 0.05
LDLRP01130 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 AC112191.1-201ENST00000523689 701 ntBASIC15.38■□□□□ 0.05
LDLRP01130 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.38■□□□□ 0.05
LDLRP01130 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.38■□□□□ 0.05
LDLRP01130 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.38■□□□□ 0.05
LDLRP01130 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.38■□□□□ 0.05
LDLRP01130 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LDLRP01130 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDLRP01130 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.38■□□□□ 0.05
LDLRP01130 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 OR2I1P-209ENST00000641730 5365 ntBASIC15.37■□□□□ 0.05
LDLRP01130 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.37■□□□□ 0.05
LDLRP01130 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 MYO15B-237ENST00000642007 4893 ntBASIC15.37■□□□□ 0.05
LDLRP01130 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.37■□□□□ 0.05
LDLRP01130 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.37■□□□□ 0.05
LDLRP01130 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.37■□□□□ 0.05
LDLRP01130 MIR661-201ENST00000384842 89 ntBASIC15.37■□□□□ 0.05
LDLRP01130 TFAMP1-201ENST00000412727 736 ntBASIC15.37■□□□□ 0.05
LDLRP01130 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.37■□□□□ 0.05
LDLRP01130 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 TIMM8BP1-201ENST00000452384 211 ntBASIC15.37■□□□□ 0.05
LDLRP01130 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.37■□□□□ 0.05
LDLRP01130 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
LDLRP01130 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.37■□□□□ 0.05
LDLRP01130 AC051619.7-201ENST00000568314 623 ntBASIC15.37■□□□□ 0.05
LDLRP01130 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
LDLRP01130 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.37■□□□□ 0.05
LDLRP01130 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.37■□□□□ 0.05
LDLRP01130 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDLRP01130 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms