Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.65■□□□□ 0.42
MSH4O15457 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.65■□□□□ 0.42
MSH4O15457 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.65■□□□□ 0.42
MSH4O15457 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.64■□□□□ 0.42
MSH4O15457 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
MSH4O15457 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.64■□□□□ 0.41
MSH4O15457 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 AC104596.2-201ENST00000512793 793 ntBASIC17.64■□□□□ 0.41
MSH4O15457 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.64■□□□□ 0.41
MSH4O15457 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 AC005225.4-201ENST00000557330 545 ntBASIC17.64■□□□□ 0.41
MSH4O15457 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.64■□□□□ 0.41
MSH4O15457 BRI3BPP1-201ENST00000594224 787 ntBASIC17.64■□□□□ 0.41
MSH4O15457 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH4O15457 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH4O15457 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH4O15457 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH4O15457 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH4O15457 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.63■□□□□ 0.41
MSH4O15457 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH4O15457 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.63■□□□□ 0.41
MSH4O15457 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH4O15457 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
MSH4O15457 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 WFDC1-204ENST00000613603 549 ntBASIC17.63■□□□□ 0.41
MSH4O15457 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH4O15457 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms