Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
HMGB3O15347 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 AC099489.1-203ENST00000598234 10568 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 PAX5-201ENST00000358127 8615 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
HMGB3O15347 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 RCN1P2-201ENST00000398357 915 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 AK4P3-201ENST00000418260 669 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 MINOS1P3-201ENST00000457048 203 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 AL353135.1-201ENST00000606729 504 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 AP000867.4-201ENST00000641616 219 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 MEGF8-202ENST00000334370 10966 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 LINC00552-201ENST00000625151 2579 ntBASIC12.8□□□□□ -0.36
HMGB3O15347 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.8□□□□□ -0.36
HMGB3O15347 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 AC092127.1-201ENST00000567093 3455 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 REXO1L1P-201ENST00000379010 6598 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 AC007292.2-201ENST00000593524 1812 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 AL592424.1-201ENST00000563624 1536 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 DUSP16-202ENST00000298573 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 AC113347.1-201ENST00000413321 391 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC12.79□□□□□ -0.36
HMGB3O15347 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.79□□□□□ -0.36
HMGB3O15347 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC12.79□□□□□ -0.36
HMGB3O15347 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.79□□□□□ -0.36
HMGB3O15347 CYP2A7P1-201ENST00000595391 815 ntBASIC12.79□□□□□ -0.36
HMGB3O15347 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.79□□□□□ -0.36
HMGB3O15347 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
HMGB3O15347 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HMGB3O15347 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms