Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AC011742.3-201ENST00000439053 820 ntBASIC21.13■□□□□ 0.97
NPHP3Q7Z494 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 RPS15-205ENST00000586686 562 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 RPS15-208ENST00000591804 711 ntTSL 5 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 AP001094.4-201ENST00000579008 2176 ntBASIC21.13■□□□□ 0.97
NPHP3Q7Z494 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.12■□□□□ 0.97
NPHP3Q7Z494 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ACTG1P2-201ENST00000415776 1125 ntBASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ACTG1P11-201ENST00000425411 1125 ntBASIC21.12■□□□□ 0.97
NPHP3Q7Z494 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CFL1-214ENST00000534769 758 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 AC022748.3-201ENST00000621828 275 ntBASIC21.12■□□□□ 0.97
NPHP3Q7Z494 AP001002.3-201ENST00000623482 206 ntBASIC21.12■□□□□ 0.97
NPHP3Q7Z494 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPHP3Q7Z494 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 AL139094.1-201ENST00000405549 1188 ntBASIC21.11■□□□□ 0.97
NPHP3Q7Z494 PARVG-202ENST00000415224 999 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 AC069218.1-201ENST00000435269 762 ntBASIC21.11■□□□□ 0.97
NPHP3Q7Z494 HIST2H2BB-201ENST00000449108 381 ntBASIC21.11■□□□□ 0.97
NPHP3Q7Z494 AL161670.2-201ENST00000557650 1227 ntBASIC21.11■□□□□ 0.97
NPHP3Q7Z494 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 AP000346.4-201ENST00000614827 381 ntBASIC21.11■□□□□ 0.97
NPHP3Q7Z494 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP3Q7Z494 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 UFM1-202ENST00000379649 846 ntTSL 4 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 AP003171.2-201ENST00000528208 925 ntBASIC21.1■□□□□ 0.97
NPHP3Q7Z494 IQSEC3P1-201ENST00000538799 536 ntBASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms