Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX4Q06945 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SOX4Q06945 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX4Q06945 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.78■□□□□ 0.28
SOX4Q06945 GAPDHP40-201ENST00000505218 1006 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 TDH-203ENST00000531764 1110 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 SNX29P1-201ENST00000548357 1007 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.78■□□□□ 0.28
SOX4Q06945 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 AC015936.2-201ENST00000593177 259 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 AC009090.5-201ENST00000624886 2285 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 CICP13-201ENST00000422015 2789 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX4Q06945 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.78■□□□□ 0.28
SOX4Q06945 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX4Q06945 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SOX4Q06945 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SOX4Q06945 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX4Q06945 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.77■□□□□ 0.28
SOX4Q06945 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
SOX4Q06945 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 AC119751.2-201ENST00000504529 210 ntBASIC16.77■□□□□ 0.28
SOX4Q06945 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 SLC25A47P1-201ENST00000531577 414 ntBASIC16.77■□□□□ 0.28
SOX4Q06945 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
SOX4Q06945 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.77■□□□□ 0.28
SOX4Q06945 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.77■□□□□ 0.28
SOX4Q06945 BTNL10-201ENST00000595971 695 ntBASIC16.77■□□□□ 0.28
SOX4Q06945 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.77■□□□□ 0.28
SOX4Q06945 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SOX4Q06945 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.77■□□□□ 0.27
SOX4Q06945 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
SOX4Q06945 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
SOX4Q06945 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SOX4Q06945 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.77■□□□□ 0.27
SOX4Q06945 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SOX4Q06945 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX4Q06945 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX4Q06945 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX4Q06945 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.76■□□□□ 0.27
SOX4Q06945 MIR1909-201ENST00000411312 80 ntBASIC16.76■□□□□ 0.27
SOX4Q06945 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.76■□□□□ 0.27
SOX4Q06945 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 ENPP7P5-201ENST00000541031 1031 ntBASIC16.76■□□□□ 0.27
SOX4Q06945 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.76■□□□□ 0.27
SOX4Q06945 MIR4259-201ENST00000584466 101 ntBASIC16.76■□□□□ 0.27
SOX4Q06945 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.76■□□□□ 0.27
SOX4Q06945 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.76■□□□□ 0.27
SOX4Q06945 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX4Q06945 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms